![]() Redundancy Analysis (RDA): a multivariate GEA Latent Factor Mixed Models (LFMM): a univariate GEA How does changing resolution affect these metrics? ![]() Convert conductance into effective distance Setting cost values and calculating conductance Simulated data: 2-island model with admixture Benchmarking file import and export options Run simulator using a previously defined parameter set Calculate Hanski’s index Si with source patch parameters Fit spatially varying coefficients model with package ‘spmoran’ Spatial filtering with MEM using package ‘spmoran’ Fit spatial simultaneous autoregressive error models (SAR) Fit models with spatially correlated error (GLS) with package ‘nlme’ Test regression residuals for spatial autocorrelation Assess correlation between trait and environment Estimate genetic and non-genetic variance components from a common garden experiment Specify spatial weights and calculate Moran’s I Create Mantel correlogram for genetic data Are genetic differentiation and diversity related? What determines genetic differentiation among sites? Spatial distribution of genetic structure Aggregate genetic data at population level (allele frequencies) Basic checking of markers and populations Use ‘terra’ and ‘tmap’ to display categorical map with color scheme Convert ‘SpatialPointsDataFrame’ to ‘sf’ object Sample landscape metrics within buffer around sampling locations Display raster data and overlay sampling locations, extract data View information stored in ‘genind’ object
0 Comments
Leave a Reply. |
AuthorWrite something about yourself. No need to be fancy, just an overview. ArchivesCategories |